Systematic review of genome-wide association studies (GWAS) of epilepsy identifies common risk variants and associated genes.

Journal: The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry

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Affiliated Institutions:  Neuroscience Institute, Department of Mental Health and Psychiatry, University of Cape Town, South Africa. Division of Human Genetics, Department of Pathology, University of Cape Town, South Africa.

Abstract summary 

The aetiology of epilepsy is known to have genetic contributions, yet results from genome-wide association studies (GWAS) have not always been consistent. We undertook a systematic review in order to identify risk variants for epilepsy.This systematic review was conducted in accordance with the PRISMA protocol. The quality of each of the studies was evaluated using the Q-Genie tool.A total of 79 SNPs, located in 64 genes, were significantly associated with epilepsy at the genome-wide level. The majority of the variants were intronic and intergenic, with as the most widely reported gene involved across studies. Two SNPs, rs2292096 and rs149212747, linked respectively to focal epilepsy (FE) and status epilepticus, were exclusively identified in individuals of Asian ancestry, alongside an Asian-exclusive synonymous variant (rs3782886) in and a missense variant (rs671) in .Genes, which encode for ion and transport channels, transcription factors, ubiquitin ligase and transporter proteins were identified as potentially involved in the aetiology of epilepsy. The review identified one missense and one synonymous variant which deserve further exploration. Future research should include populations of more diverse ancestries, which may reveal unique epilepsy-associated genes.

Authors & Co-authors:  Jacobs S S Wootton O O Ives-Deliperi V V Tucker L M LM Stein D J DJ Dalvie S S

Study Outcome 

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Statistics
Citations : 
Authors :  6
Identifiers
Doi : 10.1080/15622975.2024.2436866
SSN : 1814-1412
Study Population
Male,Female
Mesh Terms
Other Terms
ALDH2;BRAP;Single nucleotide polymorphism;genome-wide association studies;sodium channels
Study Design
Study Approach
Systemic Review
Country of Study
Publication Country
England