Integrating longitudinal mental health data into a staging database: harnessing DDI-lifecycle and OMOP vocabularies within the INSPIRE Network Datahub.

Journal: Frontiers in big data

Volume: 7

Issue: 

Year of Publication: 

Affiliated Institutions:  African Population and Health Research Center (APHRC), Nairobi, Kenya. Department of Population Health, London School of Hygiene and Tropical Medicine, London, United Kingdom. Artificial Intelligence and Machine Learning (AI and ML), CODATA-Committee on Data of the International Science Council, Paris, France. Iganga Mayuge Health and Demographic Surveillance Site (IMHDSS), Makerere University Centre for Health and Population Research (MUCHAP), Kampala, Uganda.

Abstract summary 

Longitudinal studies are essential for understanding the progression of mental health disorders over time, but combining data collected through different methods to assess conditions like depression, anxiety, and psychosis presents significant challenges. This study presents a mapping technique allowing for the conversion of diverse longitudinal data into a standardized staging database, leveraging the Data Documentation Initiative (DDI) Lifecycle and the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) standards to ensure consistency and compatibility across datasets.The "INSPIRE" project integrates longitudinal data from African studies into a staging database using metadata documentation standards structured with a snowflake schema. This facilitates the development of Extraction, Transformation, and Loading (ETL) scripts for integrating data into OMOP CDM. The staging database schema is designed to capture the dynamic nature of longitudinal studies, including changes in research protocols and the use of different instruments across data collection waves.Utilizing this mapping method, we streamlined the data migration process to the staging database, enabling subsequent integration into the OMOP CDM. Adherence to metadata standards ensures data quality, promotes interoperability, and expands opportunities for data sharing in mental health research.The staging database serves as an innovative tool in managing longitudinal mental health data, going beyond simple data hosting to act as a comprehensive study descriptor. It provides detailed insights into each study stage and establishes a data science foundation for standardizing and integrating the data into OMOP CDM.

Authors & Co-authors:  Mugotitsa Bylhah B Bhattacharjee Tathagata T Ochola Michael M Mailosi Dorothy D Amadi David D Andeso Pauline P Kuria Joseph J Momanyi Reinpeter R Omondi Evans E Kajungu Dan D Todd Jim J Kiragga Agnes A Greenfield Jay J

Study Outcome 

Source Link: Visit source

Statistics
Citations :  Aghababaie-Babaki P., Malekpour M. R., Mohammadi E., Saeedi Moghaddam S., Rashidi M. M., Ghanbari A., et al. . (2023). Global, regional, and national burden and quality of care index (QCI) of bipolar disorder: a systematic analysis of the Global Burden of Disease Study 1990 to 2019. Int. J. Soc. Psychiatry 69, 1958–1970. 10.1177/00207640231182358
Authors :  13
Identifiers
Doi : 1435510
SSN : 2624-909X
Study Population
Male,Female
Mesh Terms
Other Terms
DDI-lifecycle;OMOP Common Data Model;extract;longitudinal mental health;staging database;transform and load
Study Design
Longitudinal Study
Study Approach
Country of Study
Publication Country
Switzerland