Variants of human CLDN9 cause mild to profound hearing loss.

Journal: Human mutation

Volume: 42

Issue: 10

Year of Publication: 2022

Affiliated Institutions:  School of Biological Sciences, University of the Punjab, Quaid-i-Azam campus, Lahore, Pakistan. UF Innovation en Diagnostic Genomique des Maladies Rares, CHU Dijon Bourgogne, Dijon, France. Laboratory of Molecular Genetics, National Institute on Deafness and Other Communication Disorders, National Institutes of Health, Bethesda, Maryland, USA. Department of Anatomy and Cell Biology, University of Iowa, Iowa City, Iowa, USA. INSERM UMR GAD (Génétique des Anomalies du Développement), Université de Bourgogne, Dijon, France. Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco. McKusick-Nathans Department of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland, USA. Johns Hopkins Genomics, Johns Hopkins University, Baltimore, Maryland, USA.

Abstract summary 

Hereditary deafness is clinically and genetically heterogeneous. We investigated deafness segregating as a recessive trait in two families. Audiological examinations revealed an asymmetric mild to profound hearing loss with childhood or adolescent onset. Exome sequencing of probands identified a homozygous c.475G>A;p.(Glu159Lys) variant of CLDN9 (NM_020982.4) in one family and a homozygous c.370_372dupATC;p.(Ile124dup) CLDN9 variant in an affected individual of a second family. Claudin 9 (CLDN9) is an integral membrane protein and constituent of epithelial bicellular tight junctions (TJs) that form semipermeable, paracellular barriers between inner ear perilymphatic and endolymphatic compartments. Computational structural modeling predicts that substitution of a lysine for glutamic acid p.(Glu159Lys) alters one of two cis-interactions between CLDN9 protomers. The p.(Ile124dup) variant is predicted to locally misfold CLDN9 and mCherry tagged p.(Ile124dup) CLDN9 is not targeted to the HeLa cell membrane. In situ hybridization shows that mouse Cldn9 expression increases from embryonic to postnatal development and persists in adult inner ears coinciding with prominent CLDN9 immunoreactivity in TJs of epithelia outlining the scala media. Together with the Cldn9 deaf mouse and a homozygous frameshift of CLDN9 previously associated with deafness, the two bi-allelic variants of CLDN9 described here point to CLDN9 as a bona fide human deafness gene.

Authors & Co-authors:  Ramzan Memoona M Philippe Christophe C Belyantseva Inna A IA Nakano Yoko Y Fenollar-Ferrer Cristina C Tona Risa R Yousaf Rizwan R Basheer Rasheeda R Imtiaz Ayesha A Faridi Rabia R Munir Zunaira Z Idrees Hafiza H Salman Midhat M Nambot Sophie S Vitobello Antonio A Kartti Souad S Zarrik Oumaima O Witmer P Dane PD Sobreria Nara N Ibrahimi Azeddine A Banfi Botond B Moutton Sebastien S Friedman Thomas B TB Naz Sadaf S

Study Outcome 

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Statistics
Citations :  Ashkenazy H, Abadi S, Martz E, Chay O, Mayrose I, Pupko T, & Ben-Tal N (2016). ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Research, 44(W1), W344–W350. 10.1093/nar/gkw408
Authors :  24
Identifiers
Doi : 10.1002/humu.24260
SSN : 1098-1004
Study Population
Female
Mesh Terms
Adolescent
Other Terms
Morocco;Pakistan;claudin 9;exome sequencing;nonsyndromic deafness;tight junctions
Study Design
Study Approach
Country of Study
Publication Country
United States