RNA-seq analysis of gene expression profiles in posttraumatic stress disorder, Parkinson's disease and schizophrenia identifies roles for common and distinct biological pathways.

Journal: Discover mental health

Volume: 2

Issue: 1

Year of Publication: 

Affiliated Institutions:  Department of Psychiatry, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box , Cape Town, , South Africa. smjh@sun.ac.za. Department of Psychiatry, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box , Cape Town, , South Africa. Systems Genetics Working Group, Department of Genetics, Stellenbosch University, Stellenbosch, South Africa. Division of Molecular Biology and Human Genetics, Department of Biomedical Sciences, Stellenbosch University, Cape Town, South Africa. South African Medical Research Council/Stellenbosch University Genomics of Brain Disorders Research Unit, Stellenbosch University, Cape Town, South Africa. Division of Neurology, Department of Medicine, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.

Abstract summary 

Evidence suggests that shared pathophysiological mechanisms in neuropsychiatric disorders (NPDs) may contribute to risk and resilience. We used single-gene and network-level transcriptomic approaches to investigate shared and disorder-specific processes underlying posttraumatic stress disorder (PTSD), Parkinson's disease (PD) and schizophrenia in a South African sample. RNA-seq was performed on blood obtained from cases and controls from each cohort. Gene expression and weighted gene correlation network analyses (WGCNA) were performed using DESeq2 and CEMiTool, respectively. Significant differences in gene expression were limited to the PTSD cohort. However, WGCNA implicated, amongst others, ribosomal expression, inflammation and ubiquitination as key players in the NPDs under investigation. Differential expression in ribosomal-related pathways was observed in the PTSD and PD cohorts, and focal adhesion and extracellular matrix pathways were implicated in PD and schizophrenia. We propose that, despite different phenotypic presentations, core transdiagnostic mechanisms may play important roles in the molecular aetiology of NPDs.

Authors & Co-authors:  Hemmings Sian M J SMJ Swart Patricia P Womersely Jacqueline S JS Ovenden Ellen S ES van den Heuvel Leigh L LL McGregor Nathaniel W NW Meier Stuart S Bardien Soraya S Abrahams Shameemah S Tromp Gerard G Emsley Robin R Carr Jonathan J Seedat Soraya S

Study Outcome 

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Statistics
Citations :  Vos T, Flaxman AD, Naghavi M, Lozano R, Michaud C, Ezzati M, et al. Years lived with disability (YLDs) for 1160 sequelae of 289 diseases and injuries 1990–2010: a systematic analysis for the Global Burden of Disease Study 2010. Lancet. 2012;380:2163–2196. doi: 10.1016/S0140-6736(12)61729-2.
Authors :  13
Identifiers
Doi : 6
SSN : 2731-4383
Study Population
Male,Female
Mesh Terms
Other Terms
Study Design
Cross Sectional Study
Study Approach
Country of Study
South Africa
Publication Country
Switzerland