Genome-wide association study in 404,302 individuals identifies 7 significant loci for reaction time variability.

Journal: medRxiv : the preprint server for health sciences

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Affiliated Institutions:  Department of Psychiatry and Neuroscience Institute, University of Cape Town, South Africa. Norwegian Centre for Mental Disorders Research, KG Jebsen Centre for Psychosis Research, Division of Mental Health and Addiction, Oslo University Hospital, and Institute of Clinical Medicine, University of Oslo, Oslo, Norway. Department of Epidemiology, Mailman School of Public Health, Columbia University, USA. UCT MRC Genomic and Precision Medicine Research Unit, Division of Human Genetics, Institute of Infectious Diseases and Molecular Medicine and University of Cape Town, Cape Town, South Africa. Brain Behavior Laboratories, Department of Psychiatry, University of Pennsylvania Perelman School of Medicine, USA.

Abstract summary 

Reaction time variability (RTV), reflecting fluctuations in response time on cognitive tasks, has been proposed as an endophenotype for many neuropsychiatric disorders. There have been no large-scale genome wide association studies (GWAS) of RTV and little is known about its genetic underpinnings. Here, we used data from the UK Biobank to conduct a GWAS of RTV in participants of white British ancestry ( = 404,302) as well as a trans-ancestry GWAS meta-analysis ( = 44,873) to assess replication. We found 161 genome-wide significant single nucleotide polymorphisms (SNPs) distributed across 7 genomic loci in our discovery GWAS. Functional annotation of the variants implicated genes involved in synaptic function and neural development. The SNP-based heritability () estimate for RTV was 3%. We investigated genetic correlations between RTV and selected neuropsychological traits using linkage disequilibrium score regression, and found significant correlations with several traits, including a positive correlation with schizophrenia. We assessed the predictive ability of a polygenic score (PGS) for RTV, calculated using PRSice and PRS-CS, and found that the RTV-PGS significantly predicted RTV in independent cohorts, but that the generalizability to other ancestry groups was poor. These results identify genetic underpinnings of RTV, and support the use of RTV as an endophenotype for neurological and psychiatric disorders.

Authors & Co-authors:  Wootton Olivia O Shadrin Alexey A AA Mohn Christine C Susser Ezra E Ramesar Raj R Gur Ruben C RC Andreassen Ole A OA Stein Dan J DJ Dalvie Shareefa S

Study Outcome 

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Statistics
Citations :  MacDonald SW, Li SC, Bäckman L. Neural underpinnings of within-person variability in cognitive functioning. Psychol Aging. 2009;24(4):792–808.
Authors :  9
Identifiers
Doi : 2023.04.03.23288056
SSN : 
Study Population
Male,Female
Mesh Terms
Other Terms
Study Design
Cross Sectional Study
Study Approach
Country of Study
Publication Country
United States