RNA-seq analysis reveals prenatal alcohol exposure is associated with placental inflammatory cells and gene expression.

Journal: Gene

Volume: 894

Issue: 

Year of Publication: 2024

Affiliated Institutions:  Department of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA. Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA. Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA. Department of Psychiatry and Mental Health, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa. Department of Human Biology, University of Cape Town Faculty of Health Sciences, Cape Town, South Africa. Department of Psychiatry and Mental Health, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa; Department of Human Biology, University of Cape Town Faculty of Health Sciences, Cape Town, South Africa; Department of Psychiatry and Behavioral Neurosciences, Wayne State University School of Medicine, Detroit, MI, USA. Department of Psychiatry and Mental Health, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa; Department of Psychiatry and Behavioral Neurosciences, Wayne State University School of Medicine, Detroit, MI, USA. Department of Pathology, National Health Laboratory Service, Cape Town, South Africa. Department of Human Biology, University of Cape Town Faculty of Health Sciences, Cape Town, South Africa; Departments of Emergency Medicine and Pediatrics, Institute of Human Nutrition, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA. Electronic address: rcc@columbia.edu.

Abstract summary 

Fetal alcohol spectrum disorders (FASD) are the most common preventable cause of birth defects and neurodevelopmental disorders worldwide. The placenta is the crucial interface between mother and fetus. Prenatal alcohol exposure (PAE) has been shown to alter placental structure and expression of genes in bulk placental tissue samples, but prior studies have not examined effects on placental cell-type composition or taken cell-type into consideration in transcriptome analyses.We leveraged an existent placenta single-cell RNA-seq dataset to perform cell-type deconvolution of bulk placental RNA-seq data from 35 heavy drinking pregnant women and 33 controls in a prospective birth cohort in Cape Town, South Africa. We used bivariate analyses and multivariable adjusted linear regression models to assess the relation of PAE on inferred placental cell-type proportions. We also examined differential expression of inflammatory response genes and PAE, using multivariable adjusted linear models.Deconvolution analyses showed heterogeneous placenta cell-type composition in which stromal (27 %), endothelial (26 %) and cytotrophoblasts (18 %) were the predominant cell-types. PAE around conception was associated with a higher proportion of Hofbauer cells (B = 0.51, p = 0.035) in linear models adjusted for maternal age, infant sex, and gestational age. Among the 652 inflammatory genes examined, 35 were differential expressed in alcohol exposed placentas (FDR p < 0.05).Our findings suggest that heavy alcohol exposure during pregnancy can influence the proportion of fetal placental villi macrophages (Hofbauer cells) and increased expression of inflammatory genes. Future studies are needed to further characterize these effects and to assess the potential functional roles of placental inflammation in FASD.

Authors & Co-authors:  Williams Randy P RP Lesseur Corina C Cheng Haoxiang H Li Qian Q Deyssenroth Maya M Molteno Christopher D CD Meintjes Ernesta M EM Jacobson Sandra W SW Jacobson Joseph L JL Wainwright Helen H Hao Ke K Chen Jia J Carter R Colin RC

Study Outcome 

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Statistics
Citations : 
Authors :  13
Identifiers
Doi : 10.1016/j.gene.2023.147951
SSN : 1879-0038
Study Population
Women,Female
Mesh Terms
Female
Other Terms
FASD;Inflammation;Placenta;Prenatal alcohol exposure;RNA-seq
Study Design
Cohort Study,Cross Sectional Study
Study Approach
Country of Study
South Africa
Publication Country
Netherlands