Dissecting the genetic overlap between three complex phenotypes with trivariate MiXeR.

Journal: medRxiv : the preprint server for health sciences

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Affiliated Institutions:  Centre for Precision Psychiatry, Division of Mental Health and Addiction, Oslo University Hospital, and Institute of Clinical Medicine, University of Oslo, Oslo, Norway. Department of Medical Genetics, Oslo University Hospital, Oslo, Norway. Department of Radiology, University of California, San Diego, La Jolla, CA , United States of America.

Abstract summary 

Comorbidities are an increasing global health challenge. Accumulating evidence suggests overlapping genetic architectures underlying comorbid complex human traits and disorders. The bivariate causal mixture model (MiXeR) can quantify the polygenic overlap between complex phenotypes beyond global genetic correlation. Still, the pattern of genetic overlap between three distinct phenotypes, which is important to better characterize multimorbidities, has previously not been possible to quantify. Here, we present and validate the trivariate MiXeR tool, which disentangles the pattern of genetic overlap between three phenotypes using summary statistics from genome-wide association studies (GWAS). Our simulations show that the trivariate MiXeR can reliably reconstruct different patterns of genetic overlap. We further demonstrate how the tool can be used to estimate the proportions of genetic overlap between three phenotypes using real GWAS data, providing examples of complex patterns of genetic overlap between diverse human traits and diseases that could not be deduced from bivariate analyses. This contributes to a better understanding of the etiology of complex phenotypes and the nature of their relationship, which may aid in dissecting comorbidity patterns and their biological underpinnings.

Authors & Co-authors:  Shadrin Hindley Hagen Parker Tesfaye Jaholkowski Rahman Kutrolli Fominykh Djurovic Smeland O'Connell van der Meer Frei Andreassen Dale

Study Outcome 

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Statistics
Citations :  Holland D., et al., Beyond SNP heritability: Polygenicity and discoverability of phenotypes estimated with a univariate Gaussian mixture model. PLoS Genet, 2020. 16(5): p. e1008612.
Authors :  16
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Doi : 2024.02.23.24303236
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Study Population
Male,Female
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United States