Aberrant splicing caused by a novel KMT2A variant in Wiedemann-Steiner syndrome.

Journal: Molecular genetics & genomic medicine

Volume: 12

Issue: 3

Year of Publication: 2024

Affiliated Institutions:  Reproductive Medicine Center, Shanghai First Maternity and Infant Hospital, School of Medicine, Tongji University, Shanghai, China.

Abstract summary 

Wiedemann-Steiner syndrome (WSS) is a rare autosomal-dominant disorder caused by KMT2A variants. The aim of this study was to characterize a novel KMT2A variant in a child with WSS and demonstrate integrated diagnostic approaches.A 3-year-old female with developmental delay, distinctive facial features, and anal fistula underwent whole exome sequencing (WES). RNA analysis was performed to assess splicing effects caused by a novel variant.WES identified novel heterozygous KMT2A c.5664+6T>C variant initially classified as a variant of uncertain significance. RNA analysis provided evidence of aberrant splicing (exon 20 skipping), allowing reclassification to likely pathogenic. The patient exhibited typical WSS features along with a potential novel finding of anal fistula.This report describes a novel non-canonical splice site variant in KMT2A associated with WSS. RNA analysis was critical for variant reclassification. Detailed phenotypic evaluation revealed common and expanded WSS manifestations. This case highlights the importance of combining clinical assessment, DNA testing, and RNA functional assays for the diagnosis of rare genetic disorders.

Authors & Co-authors:  Niu Teng Zhang

Study Outcome 

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Statistics
Citations :  Cherniske, E. M. , Carpenter, T. O. , Klaiman, C. , Young, E. , Bregman, J. , Insogna, K. , Schultz, R. T. , & Pober, B. R. (2004). Multisystem study of 20 older adults with Williams syndrome. American Journal of Medical Genetics. Part A, 131(3), 255–264. 10.1002/ajmg.a.30400
Authors :  3
Identifiers
Doi : e2415
SSN : 2324-9269
Study Population
Female
Mesh Terms
Child
Other Terms
KMT2A;RNA analysis;Wiedemann-Steiner syndrome;whole exome sequencing
Study Design
Study Approach
Country of Study
Publication Country
United States