De novo variants in GABRA4 are associated with a neurological phenotype including developmental delay, behavioral abnormalities and epilepsy.

Journal: European journal of human genetics : EJHG

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Affiliated Institutions:  Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA. Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria. Department of Pathobiology of the Nervous System, Center for Brain Research, Medical University of Vienna, Vienna, Austria. lllumina Clinical Services Laboratory, Illumina Inc., San Diego, CA, USA. Personalized Medicine and Health Outcomes Research, Nicklaus Children's Hospital, Miami, FL, USA. Division of Genetics and Metabolism, Nicklaus Children's Hospital, Miami, FL, USA. Department of Neurology, Division of Epilepsy, Nicklaus Children's Hospital, Miami, FL, USA. Kaiser Permanente, San Diego, CA, USA. GeneDx, Gaithersburg, MD, USA. Mayo Clinic, Rochester, MN, USA. Kinderneurologisches Zentrum, Sana Kliniken Düsseldorf, Düsseldorf, Germany. Medizinisches Versorgungszentrum für Gerinnungsdiagnostik und Medizinische Genetik Köln, Köln, Germany. Zentrum für Humangenetik, Tübingen, Germany. Division of Neuropediatrics, Klinikum Dritter Orden, Munich, Germany. Institute of Human Genetics, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Munich, Germany. Department of Neurology, Medical University of Vienna, Vienna, Austria. martin.krenn@meduniwien.ac.at.

Abstract summary 

Nine out of 19 genes encoding GABA receptor subunits have been linked to monogenic syndromes characterized by seizures and developmental disorders. Previously, we reported the de novo variant p.(Thr300Ile) in GABRA4 in a patient with epilepsy and neurodevelopmental abnormalities. However, no new cases have been reported since then. Through an international collaboration, we collected molecular and phenotype data of individuals carrying de novo variants in GABRA4. Patients and their parents were investigated either by exome or genome sequencing, followed by targeted Sanger sequencing in some cases. All variants within the transmembrane domain, including the previously reported p.(Thr300Ile) variant, were characterized in silico and analyzed by molecular dynamics (MD) simulation studies. We identified three novel de novo missense variants in GABRA4 (NM_000809.4): c.797 C > T, p.(Pro266Leu), c.899 C > A, p.(Thr300Asn), and c.634 G > A, p.(Val212Ile). The p.(Thr300Asn) variant impacts the same codon as the previously reported variant p.(Thr300Ile) and likely arose post-zygotically as evidenced by sequencing oral mucosal cells. Overlapping phenotypes among affected individuals included developmental delay (4/4), epileptiform EEG abnormalities (3/4), attention deficits (3/4), seizures (2/4), autistic features (2/4) and structural brain abnormalities (2/4). MD simulations of the three variants within the transmembrane domain of the receptor indicate that sub-microsecond scale dynamics differ between wild-type and mutated subunits. Taken together, our findings further corroborate an association between GABRA4 and a neurological phenotype including variable neurodevelopmental, behavioral and epileptic abnormalities.

Authors & Co-authors:  Sajan Gradisch Vogel Coffey Salyakina Soler Jayakar Jayakar Bianconi Cooper Liu William Benkel-Herrenbrück Maiwald Heller Biskup Leiz Westphal Wagner Clarke Stockner Ernst Kesari Krenn

Study Outcome 

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Citations :  Olsen RW, Sieghart W. International Union of Pharmacology. LXX. Subtypes of gamma-aminobutyric acid(A) receptors: classification on the basis of subunit composition, pharmacology, and function. Update. Pharm Rev. 2008;60:243–60.
Authors :  24
Identifiers
Doi : 10.1038/s41431-024-01600-3
SSN : 1476-5438
Study Population
Male,Female
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Other Terms
Study Design
Study Approach
Country of Study
Mali
Publication Country
England